Sequence-specific Ni (II)-dependent peptide bond hydrolysis for protein engineering: Active sequence optimization

AM Protas, HHN Ariani, A Bonna… - Journal of inorganic …, 2013 - Elsevier
… has been an issue of interest in protein biotechnology. We thoroughly studied the hydrolysis
assisted by Ni(II) ions in R N –(Ser/Thr)–Xaa–His–Zaa–R C peptide sequences. First, we …

Sequence-specific Ni (II)-dependent peptide bond hydrolysis for protein engineering. Combinatorial library determination of optimal sequences

A Krezel, E Kopera, AM Protas… - Journal of the …, 2010 - ACS Publications
sequence-specific cleavage of the peptide bond is a crucial procedure in protein engineering
… among metal ions and their complexes included redox-active metal ions. They can cleave …

Ni (II) Ions May Target the Entire Melatonin Biosynthesis Pathway—A Plausible Mechanism of Nickel Toxicity

NE Wezynfeld, AM Bonna, D Płonka, W Bal, T Frączyk - Molecules, 2022 - mdpi.com
Ni(II)-assisted peptide bond hydrolysis of the tested peptides. … peptides in the 4N hydrolytically
active complex (Table 2) and … geometry optimization using a Dreiding-like forcefield [43]. …

[HTML][HTML] Targeted expression, purification, and cleavage of fusion proteins from inclusion bodies in Escherichia coli

PM Hwang, JS Pan, BD Sykes - FEBS letters, 2014 - Elsevier
… ion-catalyzed peptide bond cleavage … sequence-specific metal ion-catalyzed cleavage
show great promise, but further work is needed to fully delineate not only the optimal sequences

Human annexins A1, A2, and A8 as potential molecular targets for Ni (II) ions

NE Wezynfeld, K Bossak, W Goch… - Chemical Research …, 2014 - ACS Publications
… with the Ni(II)-dependent peptide bond hydrolysis, which … the hydrolysis reaction we used
the iterative optimization algorithm … Low-spin 4N complexes are hydrolytically active species. …

Purification of proteins with native terminal sequences using a Ni (II)-cleavable C-terminal hexahistidine affinity tag

HAH Abd Elhameed, B Hajdu, RK Balogh… - Protein Expression and …, 2019 - Elsevier
Sequence-specific Ni(II)-dependent peptide bond hydrolysis for protein engineering.
Combinatorial library determination of optimal sequences

Refinement of the Fusion Tag PagP for Effective Formation of Inclusion Bodies in Escherichia coli

X Li, B Zhang, Q Hu, C Chen, J Huang, L Liu… - Microbiology …, 2023 - Am Soc Microbiol
proteins to be hydrolyzed site-specifically by Ni 2+ ions; motif … optimized amino acid
sequence has been developed for Ni (… )-dependent peptide bond hydrolysis (39), a His 6 tag (…

Development and Applications of the ReaxFF Reactive Force Field for Biological Systems

YK Shin, CM Ashraf, ACT van Duin - … to Science and Engineering, 2021 - Springer
… (II) ion which is also commonly found at active sites acts as a catalyst in the hydrolysis of
the peptide bond … The sequence-specific peptide bond cleavage was also studied in R N -(Ser/…

Artificial metalloenzymes: Recent developments and innovations in bioinorganic catalysis

Z Thompson, JA Cowan - Small, 2020 - Wiley Online Library
… Advanced protein engineering of enzymes derived from extremophiles is also … the hydrolysis
of peptide bonds. [ 26 ] This specific Pd(II)–CD complex was shown to be sequence specific, …

[HTML][HTML] Ni2+-Assisted Hydrolysis May Affect the Human Proteome; Filaggrin Degradation Ex Vivo as an Example of Possible Consequences

EI Podobas, D Gutowska-Owsiak, S Moretti… - Frontiers in Molecular …, 2022 - frontiersin.org
… may include the peptide bond hydrolysis in X 1 -S/Tc/pHcX 2 motifs by released Ni 2+ ions.
… 150 mM NaCl buffer with or without nickel ions [1 mM Ni(NO 3 ) 2 ] under optimal (pH 8.2, 50C…